Exo-III assisted amplification strategy through target recycling of Hg2+ detection in water: A GNP based label-free colorimetry employing T-rich hairpin-loop metallo base

9^th Euro Biosensors & Bioelectronics Congress

November 29-30, 2018 | Dublin, Ireland

Abdul Ghaffar Memon, Zhou Xiaohong, Xing Yunpeng, Wang Ruoyu and He Miao

Tsinghua University, China
NED University of Engineering and Technology, Pakistan

Posters & Accepted Abstracts: J Biosens Bioelectron

Abstract :

Due to deleterious environmental and health effects of the Hg2+ ions, various online, detection methods apart from the traditional analytical tools have been developed by researchers. Biosensors especially, label, label-free, colorimetric and optical sensors have advanced with sensitive detection. However, there remains a gap of ultrasensitive quantification as noise interacts significantly in the AuNP based label-free colorimetry. This study reported an amplification strategy using Exo-III enzyme for target recycling of Hg2+ ions in a T-rich hairpin loop metallo base label-free colorimetric nanosensor with an improved sensitivity using unmodified gold nanoparticles (uGNPs) as an indicator. The two T-rich metallo base hairpin loop structures as 5â??- CTT TCA TAC ATA GAA AAT GTA TGT TTG -3 (HgS1), and 5â??- GGC TTT GAG CGC TAA GAA A TA GCG CTC TTT G -3â?? (HgS2) were tested in the study. The thermodynamic properties of HgS1 and HgS2 were calculated using online tools. The lab scale synthesized uGNPs were utilized in the analysis. The DNA sequence had T-rich bases on both tails end, which in the presence of Hg2+ forms a T-Hg2+-T mismatch, promoting the formation of dsDNA. Later, the Exo-III incubation enables the enzyme to cleave stepwise mononucleotides from the 3â?? end until the structure become single-stranded. These ssDNA fragments then adsorb on the surface of AuNPs in their presence and protect AuNPs from the induced salt aggregation. The visible change in color from blue (aggregation stage in the absence of Hg2+) and pink (dispersion state in the presence of Hg2+ and adsorption of ssDNA fragments) can be observed and analyzed through UV spectrometry. An ultrasensitive quantitative nanosensor employing Exo-III assisted target recycling of mercury ions through label-free colorimetry with nanomolar detection using uGNPs have been achieved and is further under the optimization to achieve a picomolar range by avoiding the influence of the environmental matrix. The proposed strategy will supplement in the direction of uGNP based ultrasensitive, rapid, onsite and label-free colorimetric detection.

Biography :

E-mail: agm4us@gmail.com